3FHY	Transferase	date	Dec 10, 2008
title	Crystal Structure Of D235n Mutant Of Human Pyridoxal Kinase
authors	M.K.Safo, A.K.Gandhi, F.N.Musayev, M.Ghatge, M.L.Di Salvo, V.Schi
compound		source
Molecule: Pyridoxal Kinase Chain: A, B Synonym: Pyridoxine Kinase Ec: 2.7.1.35 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: C21orf124, C21orf97, Pdxk, Pkh, Pnk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3)Plyss Competent Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: I 2 2 2	R_factor 0.214 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.110 114.643 169.681 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ATP, MG, MPD, NA, SO4	enzyme	Transferase E.C.2.7.1.35 BRENDA
Gene Ontology	Chain Function Process Component A, B pyridoxal kinase activity
Primary reference	Kinetic and structural studies of the role of the active site residue Asp235 of human pyridoxal kinase., Gandhi AK, Ghatge MS, Musayev FN, Sease A, Aboagye SO, di Salvo ML, Schirch V, Safo MK, Biochem Biophys Res Commun. 2009 Mar 27;381(1):12-5. Epub 2009 Feb 4. PMID:19351586

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (3fhy.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 3FHY CSU: Contacts of Structural Units for 3FHY Likely Quarternary Molecular Structure file(s) for 3FHY Structure Factors (335 Kb) Retrieve 3FHY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FHY from S2C, [Save to disk] Re-refined 3fhy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FHY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FHY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FHY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fhy_B] [3fhy_A] [3fhy] SWISS-PROT database: [O00764] Domain organization of [PDXK_HUMAN] by SWISSPFAM

Other resources with information on 3FHY

Community annotation for 3FHY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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