3FLP Sugar Binding Protein date Dec 19, 2008
title Crystal Structure Of Native Heptameric Sap-Like Pentraxin From Limulus Polyphemus
authors A.K.Shrive, T.J.Greenhough, P.B.Armstrong
compound source
Molecule: Sap-Like Pentraxin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Organism_scientific: Limulus Polyphemus
Organism_common: Atlantic Horseshoe Crab
Organism_taxid: 6850
Other_details: Haemolymph
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.320 167.560 140.870 90.00 92.50 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA enzyme
note 3FLP is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceCrystal structures of Limulus SAP-like pentraxin reveal two molecular aggregations., Shrive AK, Burns I, Chou HT, Stahlberg H, Armstrong PB, Greenhough TJ, J Mol Biol. 2009 Mar 13;386(5):1240-54. PMID:19452596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (500 Kb) [Save to disk]
  • Biological Unit Coordinates (3flp.pdb1.gz) 491 Kb
  • LPC: Ligand-Protein Contacts for 3FLP
  • CSU: Contacts of Structural Units for 3FLP
  • Likely Quarternary Molecular Structure file(s) for 3FLP
  • Structure Factors (7906 Kb)
  • Retrieve 3FLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FLP from S2C, [Save to disk]
  • Re-refined 3flp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FLP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FLP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3flp_I] [3flp_A] [3flp_E] [3flp_B] [3flp_J] [3flp_N] [3flp_G] [3flp_C] [3flp] [3flp_F] [3flp_K] [3flp_L] [3flp_D] [3flp_M] [3flp_H]
  • SWISS-PROT database: [Q8WQK3]
  • Domain organization of [Q8WQK3_LIMPO] by SWISSPFAM
  • Domain found in 3FLP: [PTX ] by SMART
  • Other resources with information on 3FLP
  • Community annotation for 3FLP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science