3FRJ Oxidoreductase date Jan 08, 2009
title Crystal Structure Of 11b-Hydroxysteroid Dehydrogenase-1 (11b Complex With Piperidyl Benzamide Inhibitor
authors Z.Wang, A.Sudom, N.P.Walker
compound source
Molecule: Corticosteroid 11-Beta-Dehydrogenase, Isozyme 1
Chain: A, B
Synonym: 11-Beta-Hydroxysteroid Dehydrogenase 1, 11-Beta-Hs
Ec: 1.1.1.146
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd11b1, Hsd11, Hsd11l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh10a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: P 31 2 1
R_factor 0.192 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.917 104.917 134.784 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand A49, NAP BindingDB enzyme Oxidoreductase E.C.1.1.1.146 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery and optimization of piperidyl benzamide derivatives as a novel class of 11beta-HSD1 inhibitors., Rew Y, McMinn DL, Wang Z, He X, Hungate RW, Jaen JC, Sudom A, Sun D, Tu H, Ursu S, Villemure E, Walker NP, Yan X, Ye Q, Powers JP, Bioorg Med Chem Lett. 2009 Mar 15;19(6):1797-801. Epub 2009 Jan 23. PMID:19217779
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3frj.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (3frj.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3FRJ
  • CSU: Contacts of Structural Units for 3FRJ
  • Likely Quarternary Molecular Structure file(s) for 3FRJ
  • Structure Factors (1761 Kb)
  • Retrieve 3FRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FRJ from S2C, [Save to disk]
  • Re-refined 3frj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FRJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FRJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3frj_A] [3frj] [3frj_B]
  • SWISS-PROT database: [P28845]
  • Domain organization of [DHI1_HUMAN] by SWISSPFAM
  • Other resources with information on 3FRJ
  • Community annotation for 3FRJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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