3FSR Oxidoreductase date Jan 11, 2009
title Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh
authors F.Frolow, H.Greenblatt, E.Goihberg, Y.Burstein
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A, B, C, D
Ec: 1.1.1.2
Engineered: Yes
Other_details: Chimera Of Alcohol Dehydrogenase By Exchange Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh
Organism_scientific: Thermoanaerobacter Brockii, Clostridiu Beijerinckii;
Organism_common: Thermoanaerobium Brockii, Clostridium Mp
Organism_taxid: 29323, 1520
Gene: Adh1,Adh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-I
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bs-P58
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.291 101.427 113.169 90.00 94.19 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, EDO, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBiochemical and Structural Properties of Chimeras Constructed by Exchange of Cofactor-Binding Domains in Alcohol Dehydrogenases from Thermophilic and Mesophilic Microorganisms., Goihberg E, Peretz M, Tel-Or S, Dym O, Shimon L, Frolow F, Burstein Y, Biochemistry. 2010 Feb 9. PMID:20102159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]
  • Biological Unit Coordinates (3fsr.pdb1.gz) 479 Kb
  • LPC: Ligand-Protein Contacts for 3FSR
  • CSU: Contacts of Structural Units for 3FSR
  • Structure Factors (2451 Kb)
  • Retrieve 3FSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FSR from S2C, [Save to disk]
  • Re-refined 3fsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FSR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FSR, from MSDmotif at EBI
  • Fold representative 3fsr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fsr_A] [3fsr_C] [3fsr_D] [3fsr] [3fsr_B]
  • SWISS-PROT database: [P25984] [P14941]
  • Domain organization of [ADH_CLOBE] [ADH_THEBR] by SWISSPFAM
  • Other resources with information on 3FSR
  • Community annotation for 3FSR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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