3FV7 Hydrolase date Jan 15, 2009
title Oxa-24 Beta-Lactamase Complex With Sa4-44 Inhibitor
authors G.Bou, E.Santillana, A.Sheri, A.Beceiro, J.M.Sampson, M.Kalp, C.R. A.M.Distler, S.M.Drawz, S.R.Pagadala, F.Van Den Akker, R.A.Bono A.Romero, J.D.Buynak
compound source
Molecule: Beta-Lactamase Oxa-24
Chain: A
Fragment: Residues 32-275
Synonym: Beta-Lactamase Oxa-33, Oxa40, Carbapenem-Hydrolyzi Lactamase Oxa-40, Beta-Lactamase, Carbapenemase;
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Acinetobacter Baumannii
Organism_taxid: 470
Gene: Blaoxa-33, Bla-Oxa-40, Oxa-24, Oxa40
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.390 102.390 84.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand KCX, MXS enzyme Hydrolase E.C.3.5.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, synthesis, and crystal structures of 6-alkylidene-2'-substituted penicillanic acid sulfones as potent inhibitors of Acinetobacter baumannii OXA-24 carbapenemase., Bou G, Santillana E, Sheri A, Beceiro A, Sampson JM, Kalp M, Bethel CR, Distler AM, Drawz SM, Pagadala SR, van den Akker F, Bonomo RA, Romero A, Buynak JD, J Am Chem Soc. 2010 Sep 29;132(38):13320-31. PMID:20822105
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3fv7.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3FV7
  • CSU: Contacts of Structural Units for 3FV7
  • Structure Factors (249 Kb)
  • Retrieve 3FV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FV7 from S2C, [Save to disk]
  • Re-refined 3fv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FV7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FV7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fv7_A] [3fv7]
  • SWISS-PROT database: [Q8RLA6]
  • Domain organization of [Q8RLA6_ACIBA] by SWISSPFAM
  • Other resources with information on 3FV7
  • Community annotation for 3FV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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