3FYK	Transferase	date	Jan 22, 2009
title	Crystal Structure Of A Benzthiophene Lead Bound To Mapkap Ki (Mk-2)
authors	R.G.Kurumbail, N.Caspers
compound		source
Molecule: Map Kinase-Activated Protein Kinase 2 Chain: X Fragment: Mk-2 Kinase Module And The Auto-Inhibitory Domain Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapkap-2, Mapkapk2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-De3 Expression_system_vector_type: Plasmid
symmetry	Space Group: F 41 3 2	R_factor 0.265 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 254.598 254.598 254.598 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	B98 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Benzothiophene inhibitors of MK2. Part 2: improvements in kinase selectivity and cell potency., Anderson DR, Meyers MJ, Kurumbail RG, Caspers N, Poda GI, Long SA, Pierce BS, Mahoney MW, Mourey RJ, Parikh MD, Bioorg Med Chem Lett. 2009 Aug 15;19(16):4882-4. Epub 2009 Feb 8. PMID:19616942

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3fyk.pdb1.gz) 137 Kb Biological Unit Coordinates (3fyk.pdb2.gz) 47 Kb LPC: Ligand-Protein Contacts for 3FYK CSU: Contacts of Structural Units for 3FYK Likely Quarternary Molecular Structure file(s) for 3FYK Structure Factors (151 Kb) Retrieve 3FYK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FYK from S2C, [Save to disk] Re-refined 3fyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FYK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FYK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FYK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fyk] [3fyk_X] SWISS-PROT database: [P49137] Domain organization of [MAPK2_HUMAN] by SWISSPFAM Domain found in 3FYK: [S_TKc ] by SMART

Other resources with information on 3FYK

Community annotation for 3FYK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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