3FYP	Transferase	date	Jan 22, 2009
title	Crystal Structure Of The Quadruple Mutant (N23cc246sd247e 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (Kdo8ps) Neisseria Meningitidis
authors	G.B.Jameson, E.J.Parker, F.P.Cochrane, M.L.Patchett
compound		source
Molecule: 3-Deoxy-D-Manno-Octulosonic Acid 8-Phosphate Synt Chain: A, B, C, D Synonym: 2-Dehydro-3-Deoxyphosphooctonate Aldolase, Phospho Dehydro-3-Deoxyoctonate Aldolase, Kdo-8-Phosphate Synthetas Synthase, Kdops; Ec: 2.5.1.55 Engineered: Yes Mutation: Yes		Organism_scientific: Neisseria Meningitidis Serogroup B Organism_taxid: 491 Gene: Kdsa, Nmb1283 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7-7
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.781 85.679 163.828 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	CL, GOL, MN, NA, PEP	enzyme	Transferase E.C.2.5.1.55 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Reversing evolution: re-establishing obligate metal ion dependence in a metal-independent KDO8P synthase., Cochrane FC, Cookson TV, Jameson GB, Parker EJ, J Mol Biol. 2009 Jul 24;390(4):646-61. Epub 2009 May 15. PMID:19447118

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (3fyp.pdb1.gz) 171 Kb LPC: Ligand-Protein Contacts for 3FYP CSU: Contacts of Structural Units for 3FYP Likely Quarternary Molecular Structure file(s) for 3FYP Structure Factors (1444 Kb) Retrieve 3FYP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FYP from S2C, [Save to disk] Re-refined 3fyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FYP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FYP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FYP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fyp_B] [3fyp_D] [3fyp_C] [3fyp_A] [3fyp] SWISS-PROT database: [Q9JZ55] Domain organization of [KDSA_NEIMB] by SWISSPFAM

Other resources with information on 3FYP

Community annotation for 3FYP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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