3FZK Chaperone date Jan 26, 2009
title Crystal Structures Of Hsc70bag1 In Complex With Small Molec Inhibitors
authors P.Dokurno, D.S.Williamson, J.B.Murray, A.E.Surgenor
compound source
Molecule: Heat Shock Cognate 71 Kda Protein
Chain: A
Fragment: Unp Residues 4-381
Synonym: Heat Shock 70 Kda Protein 8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspa8, Hsc70, Hsp73, Hspa10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet101

Molecule: Bag Family Molecular Chaperone Regulator 1
Chain: B
Fragment: Unp Residues 222-334
Synonym: Bag-1, Bcl-2-Associated Athanogene 1, Glucocortico Receptor-Associated Protein Rap46;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bag1, Hap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.504 119.896 53.047 90.00 106.52 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3BK, CL, TRS BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceNovel adenosine-derived inhibitors of 70 kDa heat shock protein, discovered through structure-based design., Williamson DS, Borgognoni J, Clay A, Daniels Z, Dokurno P, Drysdale MJ, Foloppe N, Francis GL, Graham CJ, Howes R, Macias AT, Murray JB, Parsons R, Shaw T, Surgenor AE, Terry L, Wang Y, Wood M, Massey AJ, J Med Chem. 2009 Mar 26;52(6):1510-3. PMID:19256508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3fzk.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3FZK
  • CSU: Contacts of Structural Units for 3FZK
  • Likely Quarternary Molecular Structure file(s) for 3FZK
  • Structure Factors (418 Kb)
  • Retrieve 3FZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FZK from S2C, [Save to disk]
  • Re-refined 3fzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FZK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FZK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fzk_A] [3fzk_B] [3fzk]
  • SWISS-PROT database: [Q99933] [P11142]
  • Domain organization of [BAG1_HUMAN] [HSP7C_HUMAN] by SWISSPFAM
  • Domain found in 3FZK: [BAG ] by SMART
  • Other resources with information on 3FZK
  • Community annotation for 3FZK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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