OCA Atlas for 3G0D

3G0D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG, XIH BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, B, D	virus receptor activity chemorepellent activity

Primary reference

Design and Synthesis of Pyrimidinone and Pyrimidinedione Inhibitors of Dipeptidyl Peptidase IV., Zhang Z, Wallace MB, Feng J, Stafford JA, Skene RJ, Shi L, Lee B, Aertgeerts K, Jennings A, Xu R, Kassel DB, Kaldor SW, Navre M, Webb DR, Gwaltney SL, J Med Chem. 2010 Dec 27. PMID:21186796

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]

Biological Unit Coordinates (3g0d.pdb1.gz) 255 Kb

Biological Unit Coordinates (3g0d.pdb2.gz) 250 Kb

Biological Unit Coordinates (3g0d.pdb3.gz) 132 Kb

Biological Unit Coordinates (3g0d.pdb4.gz) 131 Kb

Biological Unit Coordinates (3g0d.pdb5.gz) 130 Kb

Biological Unit Coordinates (3g0d.pdb6.gz) 127 Kb

LPC: Ligand-Protein Contacts for 3G0D

CSU: Contacts of Structural Units for 3G0D

Structure Factors (2328 Kb)

Retrieve 3G0D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3G0D from S2C, [Save to disk]

Re-refined 3g0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G0D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g0d] [3g0d_A] [3g0d_B] [3g0d_C] [3g0d_D]

SWISS-PROT database:

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