OCA Atlas for 3G3B

3G3B

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

3G3B is a representative structure

Gene
Ontology

Chain	Function	Process	Component
D, F, B, H

Primary reference

Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen., Velikovsky CA, Deng L, Tasumi S, Iyer LM, Kerzic MC, Aravind L, Pancer Z, Mariuzza RA, Nat Struct Mol Biol. 2009 Jul;16(7):725-30. Epub 2009 Jun 21. PMID:19543291

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]

Biological Unit Coordinates (3g3b.pdb1.gz) 48 Kb

Biological Unit Coordinates (3g3b.pdb2.gz) 47 Kb

Biological Unit Coordinates (3g3b.pdb3.gz) 46 Kb

Biological Unit Coordinates (3g3b.pdb4.gz) 33 Kb

CSU: Contacts of Structural Units for 3G3B

Likely Quarternary Molecular Structure file(s) for 3G3B

Structure Factors (519 Kb)

Retrieve 3G3B in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3G3B from S2C, [Save to disk]

Re-refined 3g3b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G3B in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g3b] [3g3b_A] [3g3b_B] [3g3b_C] [3g3b_D] [3g3b_E] [3g3b_F] [3g3b_G] [3g3b_H]

SWISS-PROT database: [D0VX19] [P00698]

Domains found in 3G3B: [LRR] [LRRNT] [LRR_TYP] [LYZ1 ] by SMART

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