3G6R	Transcription Dna	date	Feb 08, 2009
title	Gr Dna Binding Domain:Fkbp5 Complex-52, 18bp
authors	M.A.Pufall, K.R.Yamamoto, S.H.Meijsing
compound		source
Molecule: Dna (5'- D(Cpcpapgpapapcpapgpgpgptpgptptpcptpg)-3' Chain: C Engineered: Yes Other_details: Fkbp5 Binding Site Top Strand 18bp		Synthetic: Yes
Molecule: Dna (5'- D(Cpcpapgpapapcpapcpcpcptpgptptpcptpg)-3' Chain: D Engineered: Yes Other_details: Fkbp5 Binding Site Bottom Strand 18bp		Synthetic: Yes
Molecule: Glucocorticoid Receptor Chain: B, A Fragment: Unp Residues 440-525 Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Brown Rat,Rat,Rats Organism_taxid: 10116 Gene: Grl, Nr3c1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Gold Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.688 101.310 112.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	DNA binding site sequence directs glucocorticoid receptor structure and activity., Meijsing SH, Pufall MA, So AY, Bates DL, Chen L, Yamamoto KR, Science. 2009 Apr 17;324(5925):407-10. PMID:19372434

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3g6r.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 3G6R CSU: Contacts of Structural Units for 3G6R Likely Quarternary Molecular Structure file(s) for 3G6R Structure Factors (135 Kb) Retrieve 3G6R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G6R from S2C, [Save to disk] Re-refined 3g6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G6R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G6R

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3G6R, from MSDmotif at EBI Fold representative 3g6r from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g6r_B] [3g6r] [3g6r_C] [3g6r_A] [3g6r_D] SWISS-PROT database: [P06536] Domain organization of [GCR_RAT] by SWISSPFAM Domain found in 3G6R: [ZnF_C4 ] by SMART

Other resources with information on 3G6R

Community annotation for 3G6R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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