3G96	Rna Binding Protein Rna	date	Feb 12, 2009
title	Crystal Structure Of The Bacillus Anthracis Glms Ribozyme Bo Man6p
authors	S.A.Strobel, J.C.Cochrane, S.V.Lipchock, K.D.Smith
compound		source
Molecule: U1 Small Nuclear Ribonucleoprotein A Chain: A, B, C, D Fragment: Rna Binding Domain (Unp Residues 1 To 98) Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Snrpa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11
Molecule: Rna (5'-R(Ap(A2m)Pgpcpgpcpcpapgpapapc Chain: E, F, G, H Engineered: Yes		Synthetic: Yes Organism_scientific: Syntetic Construct Organism_taxid: 32630 Other_details: Chemically Synthesized
Molecule: Glms Ribozyme Chain: P, Q, R, S Engineered: Yes		Synthetic: Yes Organism_scientific: Syntetic Construct Organism_taxid: 32630 Other_details: In Vitro Transcribed From A Dna Template
symmetry	Space Group: P 1 21 1	R_factor 0.255 R_Free 0.311
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.401 232.369 104.657 90.00 90.65 90.00
method	X-Ray Diffraction	resolution	3.01 Å
ligand	6MN, A2M, GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme., Cochrane JC, Lipchock SV, Smith KD, Strobel SA, Biochemistry. 2009 Apr 21;48(15):3239-46. PMID:19228039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk] Biological Unit Coordinates (3g96.pdb1.gz) 78 Kb Biological Unit Coordinates (3g96.pdb2.gz) 79 Kb Biological Unit Coordinates (3g96.pdb3.gz) 79 Kb Biological Unit Coordinates (3g96.pdb4.gz) 79 Kb LPC: Ligand-Protein Contacts for 3G96 CSU: Contacts of Structural Units for 3G96 Structure Factors (647 Kb) Retrieve 3G96 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G96 from S2C, [Save to disk] Re-refined 3g96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G96 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G96

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G96, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g96_D] [3g96_P] [3g96_A] [3g96] [3g96_C] [3g96_Q] [3g96_F] [3g96_G] [3g96_S] [3g96_E] [3g96_R] [3g96_H] [3g96_B] SWISS-PROT database: [P09012] Domain organization of [SNRPA_HUMAN] by SWISSPFAM Domain found in 3G96: [RRM ] by SMART

Other resources with information on 3G96

Community annotation for 3G96 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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