3GBI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 3GBI (Molecule of the Month:pdb119, pdb119)
Primary referenceFrom molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal., Zheng J, Birktoft JJ, Chen Y, Wang T, Sha R, Constantinou PE, Ginell SL, Mao C, Seeman NC, Nature. 2009 Sep 3;461(7260):74-7. PMID:19727196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (3gbi.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 3GBI
  • Structure Factors (27 Kb)
  • Retrieve 3GBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GBI from S2C, [Save to disk]
  • Re-refined 3gbi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gbi] [3gbi_A] [3gbi_B] [3gbi_C] [3gbi_D]
  • SWISS-PROT database:

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