3GDE		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	ATP-dependent DNA ligase from Archaeoglobus fulgidus displays a tightly closed conformation., Kim do J, Kim O, Kim HW, Kim HS, Lee SJ, Suh SW, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt, 6):544-50. Epub 2009 May 22. PMID:19478428

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (3gde.pdb1.gz) 97 Kb LPC: Ligand-Protein Contacts for 3GDE CSU: Contacts of Structural Units for 3GDE Structure Factors (601 Kb) Retrieve 3GDE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GDE from S2C, [Save to disk] Re-refined 3gde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GDE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gde] [3gde_A] SWISS-PROT database: [O29632]

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