3GDX		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	4BD, CL, MG, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Alpha,beta-difluoromethylene deoxynucleoside 5'-triphosphates: a convenient synthesis of useful probes for DNA polymerase beta structure and function., Upton TG, Kashemirov BA, McKenna CE, Goodman MF, Prakash GK, Kultyshev R, Batra VK, Shock DD, Pedersen LC, Beard WA, Wilson SH, Org Lett. 2009 May 7;11(9):1883-6. PMID:19351147

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (3gdx.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 3GDX CSU: Contacts of Structural Units for 3GDX Likely Quarternary Molecular Structure file(s) for 3GDX Structure Factors (147 Kb) Retrieve 3GDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GDX from S2C, [Save to disk] Re-refined 3gdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gdx] [3gdx_A] [3gdx_D] [3gdx_P] [3gdx_T] SWISS-PROT database: [P06746] Domains found in 3GDX: [HhH1] [POLXc ] by SMART

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