3GGO	Oxidoreductase	date	Mar 01, 2009
title	Crystal Structure Of Prephenate Dehydrogenase From A. Aeolic Hpp And Nadh
authors	W.Sun, D.Shahinas, D.Christendat
compound		source
Molecule: Prephenate Dehydrogenase Chain: A, B, C, D Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 63363 Strain: Vf5 Gene: Aq_1755, Tyra Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.496 92.481 164.083 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	ENO, NAI	enzyme
Gene	AQ
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The crystal structure of A. aeolicus prephenate dehydrogenase reveals the mode of tyrosine inhibition., Sun W, Shahinas D, Bonvin J, Hou W, Kimber MS, Turnbull J, Christendat D, J Biol Chem. 2009 Mar 10. PMID:19279014

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk] Biological Unit Coordinates (3ggo.pdb1.gz) 94 Kb Biological Unit Coordinates (3ggo.pdb2.gz) 93 Kb LPC: Ligand-Protein Contacts for 3GGO CSU: Contacts of Structural Units for 3GGO Likely Quarternary Molecular Structure file(s) for 3GGO Structure Factors (1003 Kb) Retrieve 3GGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GGO from S2C, [Save to disk] Re-refined 3ggo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GGO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GGO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ggo_C] [3ggo_D] [3ggo_A] [3ggo] [3ggo_B] SWISS-PROT database: [O67636] Domain organization of [O67636_AQUAE] by SWISSPFAM

Other resources with information on 3GGO

Community annotation for 3GGO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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