3GGS	Transferase	date	Mar 02, 2009
title	Human Purine Nucleoside Phosphorylase Double Mutant E201q,N2 Complexed With 2-Fluoro-2'-Deoxyadenosine
authors	M.R.Sawaya, S.Afshar
compound		source
Molecule: Purine Nucleoside Phosphorylase Chain: A, B, C Synonym: Pnp, Inosine Phosphorylase Ec: 2.4.2.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Np, Pnp Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet16b
symmetry	Space Group: P 21 21 21	R_factor 0.212 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.240 130.646 149.433 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.52 Å
ligand	2FD, SO4	enzyme	Transferase E.C.2.4.2.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure of a mutant human purine nucleoside phosphorylase with the prodrug, 2-fluoro-2'-deoxyadenosine and the cytotoxic drug, 2-fluoroadenine., Afshar S, Sawaya MR, Morrison SL, Protein Sci. 2009 May;18(5):1107-14. PMID:19388075

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (3ggs.pdb1.gz) 137 Kb LPC: Ligand-Protein Contacts for 3GGS CSU: Contacts of Structural Units for 3GGS Likely Quarternary Molecular Structure file(s) for 3GGS Structure Factors (713 Kb) Retrieve 3GGS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GGS from S2C, [Save to disk] Re-refined 3ggs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GGS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GGS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GGS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ggs_C] [3ggs_A] [3ggs_B] [3ggs] SWISS-PROT database: [P00491] Domain organization of [PNPH_HUMAN] by SWISSPFAM

Other resources with information on 3GGS

Community annotation for 3GGS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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