3GH9 Oxidoreductase date Mar 03, 2009
title Crystal Structure Of Edta-Treated Bdbd (Oxidised)
authors A.Crow, A.Lewin, L.Hederstedt, N.E.Le-Brun
compound source
Molecule: Disulfide Bond Formation Protein D
Chain: A
Synonym: Disulfide Oxidoreductase D, Thiol-Disulfide Oxidoreductase D;
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 1a1
Gene: Bdbd, Bsu33480, Yvgv
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.550 43.570 54.560 90.00 107.38 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand EDO, UNX enzyme
Primary referenceCrystal Structure and Biophysical Properties of Bacillus subtilis BdbD: AN OXIDIZING THIOL:DISULFIDE OXIDOREDUCTASE CONTAINING A NOVEL METAL SITE., Crow A, Lewin A, Hecht O, Carlsson Moller M, Moore GR, Hederstedt L, Le Brun NE, J Biol Chem. 2009 Aug 28;284(35):23719-33. Epub 2009 Jun 17. PMID:19535335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3gh9.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3GH9
  • CSU: Contacts of Structural Units for 3GH9
  • Likely Quarternary Molecular Structure file(s) for 3GH9
  • Structure Factors (946 Kb)
  • Retrieve 3GH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GH9 from S2C, [Save to disk]
  • Re-refined 3gh9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GH9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GH9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gh9_A] [3gh9]
  • SWISS-PROT database: [O32218]
  • Domain organization of [BDBD_BACSU] by SWISSPFAM
  • Other resources with information on 3GH9
  • Community annotation for 3GH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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