3GKZ Immune System date Mar 11, 2009
title Crystal Structures Of A Therapeutic Single Chain Antibody In Methamphetamine
authors R.Celikel, E.C.Peterson, M.Owens, K.I.Varughese
compound source
Molecule: Anti-Methamphetamine Single Chain Fv
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Igg
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71h
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppicz-Alpha
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.338 65.265 48.513 90.00 98.75 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand B40 enzyme
Primary referenceCrystal structures of a therapeutic single chain antibody in complex with two drugs of abuse - methamphetamine and 3,4 methylenedioxy-N-methylamphetamine., Celikel R, Peterson EC, Owens SM, Varughese KI, Protein Sci. 2009 Sep 16. PMID:19760665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3gkz.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3GKZ
  • CSU: Contacts of Structural Units for 3GKZ
  • Structure Factors (103 Kb)
  • Retrieve 3GKZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKZ from S2C, [Save to disk]
  • Re-refined 3gkz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GKZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GKZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GKZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gkz] [3gkz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3GKZ: [IGv ] by SMART
    • Other resources with information on 3GKZ
  • Community annotation for 3GKZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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