3GL6	Oxidoreductase	date	Mar 11, 2009
title	Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9) K4me3 Peptide
authors	Z.Wang, J.Song, D.J.Patel
compound		source
Molecule: Histone Demethylase Jarid1a Chain: A Fragment: C-Terminal Phd Finger Synonym: Jumonjiarid Domain-Containing Protein 1a, Retinoblastoma-Binding Protein 2, Rbbp-2; Ec: 1.14.11.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jarid1a, Rbbp2, Rbp2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet-1
Molecule: Histone H3 Chain: B Fragment: Histone H3 N-Terminal Residues 1-9 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 41	R_factor 0.208 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.950 49.950 86.450 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	M3L, ZN	enzyme	Oxidoreductase E.C.1.14.11 BRENDA
note	3GL6 is a representative structure
Primary reference	Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger., Wang GG, Song J, Wang Z, Dormann HL, Casadio F, Li H, Luo JL, Patel DJ, Allis CD, Nature. 2009 May 10. PMID:19430464

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk] Biological Unit Coordinates (3gl6.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 3GL6 CSU: Contacts of Structural Units for 3GL6 Likely Quarternary Molecular Structure file(s) for 3GL6 Structure Factors (52 Kb) Retrieve 3GL6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GL6 from S2C, [Save to disk] Re-refined 3gl6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GL6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gl6_B] [3gl6_A] [3gl6] SWISS-PROT database: [P29375] [Q92133] Domain organization of [KDM5A_HUMAN] [Q92133_XENLA] by SWISSPFAM Domain found in 3GL6: [PHD ] by SMART

Other resources with information on 3GL6

Community annotation for 3GL6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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