3GLR	Hydrolase Hydrolase Regulator	date	Mar 12, 2009
title	Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 P
authors	L.Jin, W.Wei, Y.Jiang, H.Peng, J.Cai, C.Mao, H.Dai, J.E.Bemis, M.R.J J.C.Milne, C.H.Westphal, R.B.Perni
compound		source
Molecule: Nad-Dependent Deacetylase Sirtuin-3, Mitochondria Chain: A Fragment: Human Sirt3, Residues 118-399 Synonym: Sir2-Like Protein 3, Hsirt3 Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sirt3, Sir2l3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Gold(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet21b
Molecule: Acetyl-Coenzyme A Synthetase 2-Like, Mitochondria Chain: B Fragment: Acecs2 Peptide, Residues 638-649 Synonym: Acetate--Coa Ligase 2, Acetyl-Coa Synthetase 2, Ac Synthetase Short-Chain Family Member 1; Ec: 6.2.1.1 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 2 2 21	R_factor 0.203 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.190 129.063 77.899 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ALY, BCT, GOL, SO4, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structures of Human SIRT3 Displaying Substrate-induced Conformational Changes., Jin L, Wei W, Jiang Y, Peng H, Cai J, Mao C, Dai H, Choy W, Bemis JE, Jirousek MR, Milne JC, Westphal CH, Perni RB, J Biol Chem. 2009 Sep 4;284(36):24394-405. Epub 2009 Jun 16. PMID:19535340

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3glr.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 3GLR CSU: Contacts of Structural Units for 3GLR Likely Quarternary Molecular Structure file(s) for 3GLR Structure Factors (1977 Kb) Retrieve 3GLR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GLR from S2C, [Save to disk] Re-refined 3glr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GLR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GLR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GLR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3glr] [3glr_A] [3glr_B] SWISS-PROT database: [Q9NUB1] [Q9NTG7] Domain organization of [ACS2L_HUMAN] [SIRT3_HUMAN] by SWISSPFAM

Other resources with information on 3GLR

Community annotation for 3GLR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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