3GSR Immune System date Mar 27, 2009
title Crystal Structure Of The Binary Complex Between Hla-A2 And Hcmv Nlv-M5v Peptide Variant
authors J.B.Reiser, X.Saulquin, S.Gras, E.Debeaupuis, K.Echasserieau, A.Kissenpfennig, F.Legoux, A.Chouquet, M.Le Gorrec, P.Machillot, B.Neveu, N.Thielens, B.Malissen, M.Bonneville, D.Housset
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain;
Chain: A
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla, Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X90f Laqq1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Beta-2 Microglubulin, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X90f Laqq1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Hcmv Pp65 Fragment 495-503, Variant M5v (Nlvpvvatv);
Chain: P
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.019 81.011 57.667 90.00 114.56 90.00
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceStructural bases for the affinity-driven selection of a public TCR against a dominant human cytomegalovirus epitope., Gras S, Saulquin X, Reiser JB, Debeaupuis E, Echasserieau K, Kissenpfennig A, Legoux F, Chouquet A, Le Gorrec M, Machillot P, Neveu B, Thielens N, Malissen B, Bonneville M, Housset D, J Immunol. 2009 Jul 1;183(1):430-7. PMID:19542454
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3gsr.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 3GSR
  • Structure Factors (480 Kb)
  • Retrieve 3GSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GSR from S2C, [Save to disk]
  • Re-refined 3gsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GSR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GSR, from MSDmotif at EBI
  • Fold representative 3gsr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gsr_B] [3gsr] [3gsr_P] [3gsr_A]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 3GSR: [IGc1 ] by SMART
  • Other resources with information on 3GSR
  • Community annotation for 3GSR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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