3GSX Immune System date Mar 27, 2009
title Crystal Structure Of The Binary Complex Between Hla-A2 And H T8v Peptide Variant
authors J.B.Reiser, X.Saulquin, S.Gras, E.Debeaupuis, K.Echasserieau, A.Kissenpfennig, F.Legoux, A.Chouquet, M.Le Gorrec, P.Machillot N.Thielens, B.Malissen, M.Bonneville, D.Housset
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla, Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X90f Laqq1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Beta-2 Microglubulin, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X90f Laqq1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Hcmv Pp65 Fragment 495-503, Variant T8v (Nlvpmvav
Chain: P
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.001 81.036 57.320 90.00 114.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceStructural bases for the affinity-driven selection of a public TCR against a dominant human cytomegalovirus epitope., Gras S, Saulquin X, Reiser JB, Debeaupuis E, Echasserieau K, Kissenpfennig A, Legoux F, Chouquet A, Le Gorrec M, Machillot P, Neveu B, Thielens N, Malissen B, Bonneville M, Housset D, J Immunol. 2009 Jul 1;183(1):430-7. PMID:19542454
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3gsx.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 3GSX
  • Structure Factors (376 Kb)
  • Retrieve 3GSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GSX from S2C, [Save to disk]
  • Re-refined 3gsx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GSX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GSX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gsx_B] [3gsx_A] [3gsx_P] [3gsx]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 3GSX: [IGc1 ] by SMART
  • Other resources with information on 3GSX
  • Community annotation for 3GSX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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