3GU4 Transferase date Mar 28, 2009
title Crystal Structure Of Dapkq23v-Amppnp
authors L.K.Mcnamara, J.S.Schavocky, D.M.Watterson, J.S.Brunzelle
compound source
Molecule: Death-Associated Protein Kinase 1
Chain: A
Fragment: Protein Kinase Domain
Synonym: Dap Kinase 1
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dapk, Dapk1, Death-Associated Protein Kinase 1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pask-Iba3
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.883 62.431 88.412 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ANP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3gu4.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3GU4
  • CSU: Contacts of Structural Units for 3GU4
  • Structure Factors (810 Kb)
  • Retrieve 3GU4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GU4 from S2C, [Save to disk]
  • Re-refined 3gu4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GU4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GU4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GU4, from MSDmotif at EBI
  • Fold representative 3gu4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gu4_A] [3gu4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3GU4: [S_TKc ] by SMART
  • Other resources with information on 3GU4
  • Community annotation for 3GU4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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