3GUD Chaperone date Mar 29, 2009
title Crystal Structure Of A Novel Intramolecular Chaperon
authors E.C.Schulz, A.Dickmanns, R.Ficner
compound source
Molecule: Neck Appendage Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Bacillus Phage Ga-1
Organism_common: Bacteriophage Ga-1
Organism_taxid: 12345
Gene: Gene 12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: K12
symmetry Space Group: P 3
R_factor 0.197 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.040 84.040 41.450 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand BR, CL, NA, PEG enzyme
Primary referenceCrystal structure of an intramolecular chaperone mediating triple-beta-helix folding., Schulz EC, Dickmanns A, Urlaub H, Schmitt A, Muhlenhoff M, Stummeyer K, Schwarzer D, Gerardy-Schahn R, Ficner R, Nat Struct Mol Biol. 2010 Feb;17(2):210-5. Epub 2010 Jan 31. PMID:20118935
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3gud.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3gud.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3GUD
  • CSU: Contacts of Structural Units for 3GUD
  • Structure Factors (115 Kb)
  • Retrieve 3GUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GUD from S2C, [Save to disk]
  • Re-refined 3gud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GUD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GUD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gud_B] [3gud_A] [3gud]
  • SWISS-PROT database: [Q9FZW3]
  • Domain organization of [Q9FZW3_BPGA1] by SWISSPFAM
  • Other resources with information on 3GUD
  • Community annotation for 3GUD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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