3GV2	Viral Protein	date	Mar 30, 2009
title	X-Ray Structure Of Hexameric Hiv-1 Ca
authors	B.N.Kelly
compound		source
Molecule: Capsid Protein P24,Carbon Dioxide-Concentrating M Protein Ccmk Homolog 4; Chain: A, B, C, D, E, F Fragment: Unp Residues 133-351 Of Capsid Protein P24, Unp R 109 Of Ccmk; Synonym: Pr55gag Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Ny5), Synechocystis Sp. (Strain Pcc 6803 Kazusa); Organism_common: Hiv-1 Organism_taxid: 11698, 1111708 Strain: Isolate Ny5, Pcc 6803 Kazusa Gene: Gag, Ccmk4, Slr1839 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21codon+ Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a Modified Other_details: Fusion Gene
symmetry	Space Group: C 1 2 1	R_factor 0.282 R_Free 0.323
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.618 156.437 196.644 90.00 100.35 90.00
method	X-Ray Diffraction	resolution	7.00 Å
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	X-ray structures of the hexameric building block of the HIV capsid., Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, Stout CD, Sundquist WI, Hill CP, Yeager M, Cell. 2009 Jun 26;137(7):1282-92. Epub 2009 Jun 11. PMID:19523676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (3gv2.pdb1.gz) 105 Kb CSU: Contacts of Structural Units for 3GV2 Likely Quarternary Molecular Structure file(s) for 3GV2 Structure Factors (49 Kb) Retrieve 3GV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GV2 from S2C, [Save to disk] Re-refined 3gv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GV2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GV2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gv2_B] [3gv2_C] [3gv2_E] [3gv2_F] [3gv2_D] [3gv2_A] [3gv2] SWISS-PROT database: [P12497] Domain organization of [POL_HV1N5] by SWISSPFAM Domain found in 3GV2: [BMC ] by SMART

Other resources with information on 3GV2

Community annotation for 3GV2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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