3GVL date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SIA, SLB enzyme
Primary referenceStructural Basis for the Recognition and Cleavage of Polysialic Acid by the Bacteriophage K1F Tailspike Protein EndoNF., Schulz EC, Schwarzer D, Frank M, Stummeyer K, Muhlenhoff M, Dickmanns A, Gerardy-Schahn R, Ficner R, J Mol Biol. 2010 Mar 19;397(1):341-351. Epub 2010 Jan 22. PMID:20096705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3gvl.pdb1.gz) 407 Kb
  • LPC: Ligand-Protein Contacts for 3GVL
  • CSU: Contacts of Structural Units for 3GVL
  • Structure Factors (1487 Kb)
  • Retrieve 3GVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GVL from S2C, [Save to disk]
  • Re-refined 3gvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gvl] [3gvl_A]
  • SWISS-PROT database:

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