3GVU	Transferase	date	Mar 31, 2009
title	The Crystal Structure Of Human Abl2 In Complex With Gleevec
authors	E.Ugochukwu, E.Salah, A.Barr, P.Mahajan, B.Shrestha, P.Savitsky, A.Chaikuad, P.Filippakopoulos, A.Roos, A.C.W.Pike, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, Struct Genomics Consortium (Sgc)
compound		source
Molecule: Tyrosine-Protein Kinase Abl2 Chain: A Fragment: Protein Kinase Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 2, Related Gene Protein, Tyrosine Kinase Arg; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Abl2 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High5 Insect Cell Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Lic-Bse
symmetry	Space Group: C 2 2 21	R_factor 0.189 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.460 99.440 87.810 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	STI BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (3gvu.pdb1.gz) 49 Kb Biological Unit Coordinates (3gvu.pdb2.gz) 96 Kb LPC: Ligand-Protein Contacts for 3GVU CSU: Contacts of Structural Units for 3GVU Likely Quarternary Molecular Structure file(s) for 3GVU Structure Factors (381 Kb) Retrieve 3GVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GVU from S2C, [Save to disk] Re-refined 3gvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GVU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GVU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gvu_A] [3gvu] SWISS-PROT database: [P42684] Domain organization of [ABL2_HUMAN] by SWISSPFAM Domain found in 3GVU: [TyrKc ] by SMART

Other resources with information on 3GVU

Community annotation for 3GVU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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