3GWJ Oxygen Transport date Apr 01, 2009
title Crystal Structure Of Antheraea Pernyi Arylphorin
authors K.S.Ryu, J.O.Lee, T.H.Kwon, S.Kim
compound source
Molecule: Arylphorin
Chain: A, B, C, D, E, F
Fragment: Subunit-A Of Arylphorin, Unp Residues 24-697
Organism_scientific: Antheraea Pernyi
Organism_common: Chinese Oak Silk Moth
Organism_taxid: 7119
Strain: Antheraea Pernyi
Other_details: Purified From Last Staged Larvae
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.196 119.470 319.878 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand BMA, FMT, GLC, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe presence of mono-glucosylated N196-glycan is important for the structural stability of storage protein, arylphorin., Ryu KS, Lee JO, Kwon TH, Choi HH, Park HS, Hwang SK, Lee ZW, Lee KB, Han YH, Choi YS, Jeon YH, Cheong C, Kim S, Biochem J. 2009 Apr 9. PMID:19358695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (731 Kb) [Save to disk]
  • Biological Unit Coordinates (3gwj.pdb1.gz) 719 Kb
  • LPC: Ligand-Protein Contacts for 3GWJ
  • CSU: Contacts of Structural Units for 3GWJ
  • Likely Quarternary Molecular Structure file(s) for 3GWJ
  • Structure Factors (967 Kb)
  • Retrieve 3GWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GWJ from S2C, [Save to disk]
  • Re-refined 3gwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GWJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GWJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gwj_C] [3gwj_F] [3gwj_E] [3gwj_D] [3gwj_A] [3gwj_B] [3gwj]
  • SWISS-PROT database: [Q7Z1F8]
  • Domain organization of [ARY_ANTPE] by SWISSPFAM
  • Other resources with information on 3GWJ
  • Community annotation for 3GWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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