3GYI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FAD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA hydrogen-bonding network is important for oxidation and isomerization in the reaction catalyzed by cholesterol oxidase., Lyubimov AY, Chen L, Sampson NS, Vrielink A, Acta Crystallogr D Biol Crystallogr. 2009 Nov;65(Pt 11):1222-31. Epub 2009, Oct 22. PMID:19923719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (3gyi.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 3GYI
  • CSU: Contacts of Structural Units for 3GYI
  • Structure Factors (1989 Kb)
  • Retrieve 3GYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GYI from S2C, [Save to disk]
  • Re-refined 3gyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gyi] [3gyi_A]
  • SWISS-PROT database: [P12676]

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