3GZ9	Transcription	date	Apr 06, 2009
title	Crystal Structure Of Peroxisome Proliferator-Activated Recep (Ppard) In Complex With A Full Agonist
authors	Z.Wang, A.Sudom, N.P.Walker
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Delta Chain: A Fragment: Ligand Binding Domain (Residues 207-475) Synonym: Ppar-Delta, Ppar-Beta, Nuclear Receptor Subfamily Member 2, Nuclear Hormone Receptor 1, Nuc1, Nuci; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppard, Nr1c2, Pparb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset
symmetry	Space Group: P 21 21 2	R_factor 0.189 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.577 92.129 39.555 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	B7G, D32 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of a PPARdelta agonist with partial agonistic activity on PPARgamma., Connors RV, Wang Z, Harrison M, Zhang A, Wanska M, Hiscock S, Fox B, Dore M, Labelle M, Sudom A, Johnstone S, Liu J, Walker NP, Chai A, Siegler K, Li Y, Coward P, Bioorg Med Chem Lett. 2009 Jul 1;19(13):3550-4. Epub 2009 May 9. PMID:19464171

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3gz9.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 3GZ9 CSU: Contacts of Structural Units for 3GZ9 Likely Quarternary Molecular Structure file(s) for 3GZ9 Structure Factors (1219 Kb) Retrieve 3GZ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GZ9 from S2C, [Save to disk] Re-refined 3gz9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GZ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GZ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GZ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gz9] [3gz9_A] SWISS-PROT database: [Q03181] Domain organization of [PPARD_HUMAN] by SWISSPFAM Domain found in 3GZ9: [HOLI ] by SMART

Other resources with information on 3GZ9

Community annotation for 3GZ9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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