3H1J Oxidoreductase date Apr 12, 2009
title Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
authors Z.Zhang, L.Huang, V.M.Shulmeister, Y.I.Chi, K.K.Kim, L.W.Hung, A.R.Crofts, E.A.Berry, S.H.Kim
compound source
Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein I;
Chain: A, N
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein 2;
Chain: B, O
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B
Chain: C, P
Synonym: Ubiquinol-Cytochrome-C Reductase Complex Cytochrom Subunit, Cytochrome B-C1 Complex Subunit 3, Complex III Sub Complex III Subunit III;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Cytochrome C1, Heme Protein
Chain: D, Q
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E, R
Fragment: Sequence Database Residues 77-272
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 14 Protein;
Chain: F, S
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ub Binding Protein Qp-C;
Chain: G, T
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 11 Protein, Complex III Subunit Viii;
Chain: H, U
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: I, V
Fragment: Sequence Database Residues 1-76
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 7. Protein;
Chain: J, W
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.464 182.448 241.328 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CDL, FES, GOL, HEC, HEM, PEE, PLC, SMA, UNL, UQ enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
note 3H1J (Molecule of the Month:pdb137)
subcellular loc. Membrane localization by OPM: Mitochondrial inner membrane
intermembrane space side
matrix space side
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A


O, B
  • ubiquinol-cytochrome-c reduc...


  • Q, D
  • ubiquinol-cytochrome-c reduc...
  • electron transfer activity


  • S, F


    T, G
  • ubiquinol-cytochrome-c reduc...


  • V, I


    Primary referenceElectron transfer by domain movement in cytochrome bc1., Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH, Nature. 1998 Apr 16;392(6677):677-84. PMID:9565029
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]
  • Biological Unit Coordinates (3h1j.pdb1.gz) 660 Kb
  • LPC: Ligand-Protein Contacts for 3H1J
  • CSU: Contacts of Structural Units for 3H1J
  • Likely Quarternary Molecular Structure file(s) for 3H1J
  • Structure Factors (1252 Kb)
  • Retrieve 3H1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H1J from S2C, [Save to disk]
  • Re-refined 3h1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H1J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H1J, from MSDmotif at EBI
  • Fold representative 3h1j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h1j_F] [3h1j_J] [3h1j] [3h1j_I] [3h1j_U] [3h1j_R] [3h1j_S] [3h1j_A] [3h1j_G] [3h1j_E] [3h1j_C] [3h1j_V] [3h1j_T] [3h1j_H] [3h1j_N] [3h1j_W] [3h1j_P] [3h1j_B] [3h1j_O] [3h1j_D] [3h1j_Q]
  • SWISS-PROT database: [P18946] [Q5ZLR5]
  • Domain organization of [CYB_CHICK] [UCRI_CHICK] by SWISSPFAM
  • Other resources with information on 3H1J
  • Community annotation for 3H1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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