3H32	Blood Clotting	date	Apr 15, 2009
title	Crystal Structure Of D-Dimer From Human Fibrin Complexed Wit Arg-Pro-Tyr-Amide
authors	R.F.Doolittle, L.Pandi
compound		source
Molecule: Fibrinogen Alpha Chain Chain: A, D Fragment: Unp Residues 20-216 Synonym: Fibrinopeptide A		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Plasma
Molecule: Fibrinogen Beta Chain Chain: B, E Fragment: Unp Residues 31-488 Synonym: Fibrinopeptide B		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Plasma
Molecule: Fibrinogen Gamma Chain, Isoform Gamma-A Chain: C, F Fragment: Unp Residues 27-437		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Blood Plasma
Molecule: Fibrin B Knob Pentapeptide Chain: M, N Fragment: Unp Residues 22-26 Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide Based On The Bovine (Bos T Fibrinopeptide B, P02676, Fibb_bovin, Sequence Position 22-
symmetry	Space Group: C 1 2 1	R_factor 0.263 R_Free 0.320
crystal cell	length a length b length c angle alpha angle beta angle gamma 264.720 97.320 132.490 90.00 122.78 90.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand	CA, GAL, MAN, NAG, SIA	enzyme
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Two Families of Synthetic Peptides That Enhance Fibrin Turbidity and Delay Fibrinolysis by Different Mechanisms., Pandi L, Kollman JM, Lopez-Lira F, Burrows JM, Riley M, Doolittle RF, Biochemistry. 2009 Jul 9. PMID:19588915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk] Biological Unit Coordinates (3h32.pdb1.gz) 222 Kb LPC: Ligand-Protein Contacts for 3H32 CSU: Contacts of Structural Units for 3H32 Likely Quarternary Molecular Structure file(s) for 3H32 Structure Factors (215 Kb) Retrieve 3H32 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H32 from S2C, [Save to disk] Re-refined 3h32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H32 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H32

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H32, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h32_D] [3h32_N] [3h32_C] [3h32_A] [3h32_E] [3h32_M] [3h32_B] [3h32] [3h32_F] SWISS-PROT database: [P02671] [P02676] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_BOVIN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domains found in 3H32: [FBG] [Fib_alpha ] by SMART

Other resources with information on 3H32

Community annotation for 3H32 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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