3H3P Crystal structure of HIV epitope-scaffold 4E10 Fv complex date
authors Holmes, M.A.
compound source
R_Free 0.28697
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand CA enzyme
Primary referenceInteractions between lipids and human anti-HIV antibody 4E10 can be reduced without ablating neutralizing activity., Xu H, Song L, Kim M, Holmes MA, Kraft Z, Sellhorn G, Reinherz EL, Stamatatos L, Strong RK, J Virol. 2010 Jan;84(2):1076-88. Epub 2009 Nov 11. PMID:19906921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3h3p.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3h3p.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3H3P
  • CSU: Contacts of Structural Units for 3H3P
  • Structure Factors (295 Kb)
  • Retrieve 3H3P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H3P from S2C, [Save to disk]
  • Re-refined 3h3p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H3P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H3P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H3P, from MSDmotif at EBI
  • Fold representative 3h3p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h3p_L] [3h3p_S] [3h3p] [3h3p_M] [3h3p_T] [3h3p_I] [3h3p_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3H3P: [IGv ] by SMART
  • Other resources with information on 3H3P
  • Community annotation for 3H3P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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