3H9S Immune System date Apr 30, 2009
title The Complex Between Tcr A6 And Human Class I Mhc Hla-A2 With Tel1p Peptide
authors O.Y.Borbulevych, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Synonym: Mhc Class I Antigen A2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Tel1p Peptide
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesis

Molecule: A6 Tcr Alpha Chain
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Trbv6-5 Protein
Chain: E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trbv6-5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.106 48.308 92.482 90.00 90.97 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceT cell receptor cross-reactivity directed by antigen-dependent tuning of peptide-MHC molecular flexibility., Borbulevych OY, Piepenbrink KH, Gloor BE, Scott DR, Sommese RF, Cole DK, Sewell AK, Baker BM, Immunity. 2009 Dec 18;31(6):885-96. PMID:20064447
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3h9s.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3H9S
  • CSU: Contacts of Structural Units for 3H9S
  • Structure Factors (436 Kb)
  • Retrieve 3H9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H9S from S2C, [Save to disk]
  • Re-refined 3h9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H9S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h9s_C] [3h9s_A] [3h9s_B] [3h9s] [3h9s_D] [3h9s_E]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domains found in 3H9S: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 3H9S
  • Community annotation for 3H9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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