OCA Atlas for 3HDQ

3HDQ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FAD, GDU

enzyme

Gene

DR ; DR

Gene
Ontology

Chain	Function	Process	Component
E, F, B, A, I, H, G, D, J, C

Primary reference

Structural basis of substrate binding to UDP-galactopyranose mutase: crystal structures in the reduced and oxidized state complexed with UDP-galactopyranose and UDP., Partha SK, van Straaten KE, Sanders DA, J Mol Biol. 2009 Dec 18;394(5):864-77. Epub 2009 Oct 21. PMID:19836401

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (643 Kb) [Save to disk]

Biological Unit Coordinates (3hdq.pdb1.gz) 135 Kb

Biological Unit Coordinates (3hdq.pdb2.gz) 134 Kb

Biological Unit Coordinates (3hdq.pdb3.gz) 133 Kb

Biological Unit Coordinates (3hdq.pdb4.gz) 133 Kb

Biological Unit Coordinates (3hdq.pdb5.gz) 133 Kb

Biological Unit Coordinates (3hdq.pdb6.gz) 631 Kb

LPC: Ligand-Protein Contacts for 3HDQ

CSU: Contacts of Structural Units for 3HDQ

Structure Factors (1814 Kb)

Retrieve 3HDQ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3HDQ from S2C, [Save to disk]

Re-refined 3hdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HDQ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hdq] [3hdq_A] [3hdq_B] [3hdq_C] [3hdq_D] [3hdq_E] [3hdq_F] [3hdq_G] [3hdq_H] [3hdq_I] [3hdq_J]

SWISS-PROT database: [Q9RYF1]

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