3HEG P38 in complex with Sorafenib date
authors Namboodiri, H.V., Karpusas, M.
compound source
symmetry
R_factor
R_Free 0.30929
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand BAX BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of imatinib and sorafenib binding to p38alpha compared with c-Abl and b-Raf provides structural insights for understanding the selectivity of inhibitors targeting the DFG-out form of protein kinases., Namboodiri HV, Bukhtiyarova M, Ramcharan J, Karpusas M, Lee Y, Springman EB, Biochemistry. 2010 May 4;49(17):3611-8. PMID:20337484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3heg.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3HEG
  • CSU: Contacts of Structural Units for 3HEG
  • Structure Factors (113 Kb)
  • Retrieve 3HEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HEG from S2C, [Save to disk]
  • Re-refined 3heg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HEG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HEG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3heg] [3heg_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3HEG: [S_TKc ] by SMART
  • Other resources with information on 3HEG
  • Community annotation for 3HEG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science