3HI7 Oxidoreductase date May 19, 2009
title Crystal Structure Of Human Diamine Oxidase
authors A.P.Mcgrath, J.M.Guss
compound source
Molecule: Amiloride-Sensitive Amine Oxidase
Chain: A, B
Synonym: Diamine Oxidase, Dao, Amiloride-Binding Protein, A Histaminase, Kidney Amine Oxidase, Kao;
Ec: 1.4.3.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abp1
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtdao
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.506 94.784 196.525 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BMA, CA, CU, GOL, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and inhibition of human diamine oxidase., McGrath AP, Hilmer KM, Collyer CA, Shepard EM, Elmore BO, Brown DE, Dooley DM, Guss JM, Biochemistry. 2009 Oct 20;48(41):9810-22. PMID:19764817
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (3hi7.pdb1.gz) 256 Kb
  • LPC: Ligand-Protein Contacts for 3HI7
  • CSU: Contacts of Structural Units for 3HI7
  • Structure Factors (2359 Kb)
  • Retrieve 3HI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HI7 from S2C, [Save to disk]
  • Re-refined 3hi7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HI7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HI7, from MSDmotif at EBI
  • Fold representative 3hi7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hi7_A] [3hi7_B] [3hi7]
  • SWISS-PROT database: [P19801]
  • Domain organization of [ABP1_HUMAN] by SWISSPFAM
  • Other resources with information on 3HI7
  • Community annotation for 3HI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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