3HJZ Transferase date May 22, 2009
title The Structure Of An Aldolase From Prochlorococcus Marinus
authors A.U.Singer, X.Xu, H.Cui, A.Joachimiak, A.M.Edwards, A.Savchenko, M Center For Structural Genomics (Mcsg)
compound source
Molecule: Transaldolase B
Chain: A
Ec: 2.2.1.2
Engineered: Yes
Organism_scientific: Prochlorococcus Marinus Str. Mit 9312
Organism_taxid: 74546
Strain: Mit 9132
Gene: Pmt9312_0519, Tal, Transaldose B
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon Plus Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tvlic
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.755 80.376 97.866 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, EDO, MSE, NA, PEG, SO4 enzyme Transferase E.C.2.2.1.2 BRENDA
Gene PMT9312
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePhage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism., Thompson LR, Zeng Q, Kelly L, Huang KH, Singer AU, Stubbe J, Chisholm SW, Proc Natl Acad Sci U S A. 2011 Aug 15. PMID:21844365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3hjz.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3HJZ
  • CSU: Contacts of Structural Units for 3HJZ
  • Likely Quarternary Molecular Structure file(s) for 3HJZ
  • Structure Factors (392 Kb)
  • Retrieve 3HJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HJZ from S2C, [Save to disk]
  • Re-refined 3hjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HJZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hjz_A] [3hjz]
  • SWISS-PROT database: [Q31C15]
  • Domain organization of [TAL_PROM9] by SWISSPFAM
  • Other resources with information on 3HJZ
  • Community annotation for 3HJZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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