3HLN Hydrolase date May 27, 2009
title Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer D Bonds
authors M.S.Kimber, A.Y.H.Yu, M.Borg, H.S.Chan, W.A.Houry
compound source
Molecule: Atp-Dependent Clp Protease Proteolytic Subunit
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, 1, 2;
Fragment: Unp Residues 15-207
Synonym: Endopeptidase Clp, Caseinolytic Protease, Protease Shock Protein F21.5;
Ec: 3.4.21.92
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Gene: B0437, Clpp, Jw0427, Lopp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg1146(De3)Clpp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet9a
symmetry Space Group: P 32 2 1
R_factor 0.213 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.299 182.299 476.859 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand CA enzyme Hydrolase E.C.3.4.21.92 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, 2, V, Z, Q, 1, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceStructural and theoretical studies indicate that the cylindrical protease ClpP samples extended and compact conformations., Kimber MS, Yu AY, Borg M, Leung E, Chan HS, Houry WA, Structure. 2010 Jul 14;18(7):798-808. PMID:20637416
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (700 Kb) [Save to disk]
  • Biological Unit Coordinates (3hln.pdb1.gz) 351 Kb
  • Biological Unit Coordinates (3hln.pdb2.gz) 348 Kb
  • LPC: Ligand-Protein Contacts for 3HLN
  • CSU: Contacts of Structural Units for 3HLN
  • Structure Factors (2286 Kb)
  • Retrieve 3HLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HLN from S2C, [Save to disk]
  • Re-refined 3hln structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HLN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HLN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hln_X] [3hln_E] [3hln_L] [3hln_U] [3hln_A] [3hln_D] [3hln_Y] [3hln_N] [3hln_B] [3hln_W] [3hln_1] [3hln_M] [3hln_Q] [3hln_T] [3hln_O] [3hln] [3hln_R] [3hln_2] [3hln_J] [3hln_G] [3hln_F] [3hln_P] [3hln_Z] [3hln_K] [3hln_S] [3hln_C] [3hln_H] [3hln_I] [3hln_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3HLN
  • Community annotation for 3HLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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