3HOD	Transcription	date	Jun 02, 2009
title	Crystal Structure Of The Ppargamma-Lbd Complexed With A New 3phenylpropanoic Acid
authors	G.Pochetti, R.Montanari, F.Mazza, F.Loiodice, G.Fracchiolla, A.La A.Lavecchia, E.Novellino
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain (Lbd), Unp Residues 223-504 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.262 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.707 62.222 119.110 90.00 102.83 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ZZH BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	New 2-aryloxy-3-phenyl-propanoic acids as peroxisome proliferator-activated receptors alpha/gamma dual agonists with improved potency and reduced adverse effects on skeletal muscle function., Fracchiolla G, Laghezza A, Piemontese L, Tortorella P, Mazza F, Montanari R, Pochetti G, Lavecchia A, Novellino E, Pierno S, Conte Camerino D, Loiodice F, J Med Chem. 2009 Oct 22;52(20):6382-93. PMID:19775169

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3hod.pdb1.gz) 90 Kb LPC: Ligand-Protein Contacts for 3HOD CSU: Contacts of Structural Units for 3HOD Structure Factors (309 Kb) Retrieve 3HOD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HOD from S2C, [Save to disk] Re-refined 3hod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HOD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HOD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HOD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hod_A] [3hod_B] [3hod] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 3HOD: [HOLI ] by SMART

Other resources with information on 3HOD

Community annotation for 3HOD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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