3HQV Structural Protein, Contractile Protein date Jun 08, 2009
title Low Resolution, Molecular Envelope Structure Of Type I Colla Situ Determined By Fiber Diffraction. Single Type I Collage Molecule, Rigid Body Refinement
authors J.P.Orgel
compound source
Molecule: Collagen Alpha-1(I) Chain
Chain: A, C
Synonym: Alpha-1 Type I Collagen
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Tissue: Tail Tendon

Molecule: Collagen Alpha-2(I) Chain
Chain: B
Synonym: Alpha-2 Type I Collagen

Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Tissue: Tail Tendon
symmetry Space Group: P 1
R_factor 0.066 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.970 26.950 677.900 89.24 94.59 105.58
method Fiber Diffractionresolution 5.16 Å
ligand HYP, LYZ enzyme
note 3HQV supersedes 1YGV
Primary referenceMicrofibrillar structure of type I collagen in situ., Orgel JP, Irving TC, Miller A, Wess TJ, Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9001-5. Epub 2006 Jun 2. PMID:16751282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3hqv.pdb1.gz) 542 Kb
  • LPC: Ligand-Protein Contacts for 3HQV
  • CSU: Contacts of Structural Units for 3HQV
  • Likely Quarternary Molecular Structure file(s) for 3HQV
  • Structure Factors (5 Kb)
  • Retrieve 3HQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HQV from S2C, [Save to disk]
  • View 3HQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HQV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HQV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hqv_A] [3hqv_C] [3hqv] [3hqv_B]
  • SWISS-PROT database: [P02454] [P02466]
  • Domain organization of [CO1A1_RAT] [CO1A2_RAT] by SWISSPFAM
  • Other resources with information on 3HQV
  • Community annotation for 3HQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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