3HTR Structural Genomics, Unknown Function date Jun 12, 2009
title Crystal Structure Of Prc-Barrel Domain Protein From Rhodopseudomonas Palustris
authors Y.Kim, C.Tesar, R.Jedrzejczak, J.Kinney, G.Babnigg, C.Harwood, C.Kerfeld, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Prc-Barrel Domain Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Strain: Cga0009
Gene: Rpa4758
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.644 63.061 61.866 90.00 99.39 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand ACY, MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3htr.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3HTR
  • CSU: Contacts of Structural Units for 3HTR
  • Likely Quarternary Molecular Structure file(s) for 3HTR
  • Structure Factors (126 Kb)
  • Retrieve 3HTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HTR from S2C, [Save to disk]
  • Re-refined 3htr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HTR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HTR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3htr_B] [3htr] [3htr_A]
  • SWISS-PROT database: [Q6N0K4]
  • Domain organization of [Q6N0K4_RHOPA] by SWISSPFAM
    • Other resources with information on 3HTR
  • Community annotation for 3HTR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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