3HUP	Immune System	date	Jun 15, 2009
title	High-Resolution Structure Of The Extracellular Domain Of Hum
authors	P.Kolenko, J.Dohnalek, T.Skalova, J.Hasek, J.Duskova, O.Vanek, K.B
compound		source
Molecule: Early Activation Antigen Cd69 Chain: A, B Fragment: Extracellular Domain, Unp Residues 70-199 Synonym: Early T-Cell Activation Antigen P60, Gp3228, Leu- Ea1, Bl-Acp26, Activation Inducer Molecule, Aim; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd69 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-(De3) Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsetb
symmetry	Space Group: P 61	R_factor 0.133 R_Free 0.184
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.067 86.067 61.975 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.37 Å
ligand	CL, NA	enzyme
Primary reference	The high-resolution structure of the extracellular domain of human CD69 using a novel polymer., Kolenko P, Skalova T, Vanek O, Stepankova A, Duskova J, Hasek J, Bezouska K, Dohnalek J, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Dec 1;65(Pt, 12):1258-60. Epub 2009 Nov 27. PMID:20054122

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (3hup.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 3HUP CSU: Contacts of Structural Units for 3HUP Structure Factors (692 Kb) Retrieve 3HUP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HUP from S2C, [Save to disk] Re-refined 3hup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HUP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HUP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HUP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hup_A] [3hup] [3hup_B] SWISS-PROT database: [Q07108] Domain organization of [CD69_HUMAN] by SWISSPFAM Domain found in 3HUP: [CLECT ] by SMART

Other resources with information on 3HUP

Community annotation for 3HUP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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