3HVC Transferase date Jun 15, 2009
title Crystal Structure Of Human P38alpha Map Kinase
authors J.J.Perry, J.A.Tainer
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max- Interacting Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest2
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.940 74.690 77.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GG5 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
note 3HVC supersedes 2P5A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencep38alpha MAP Kinase C-Terminal Domain Binding Pocket Characterized by Crystallographic and Computational Analyses., Perry JJ, Harris RM, Moiani D, Olson AJ, Tainer JA, J Mol Biol. 2009 Jun 6. PMID:19501598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3hvc.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3HVC
  • CSU: Contacts of Structural Units for 3HVC
  • Likely Quarternary Molecular Structure file(s) for 3HVC
  • Structure Factors (178 Kb)
  • Retrieve 3HVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HVC from S2C, [Save to disk]
  • Re-refined 3hvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HVC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HVC, from MSDmotif at EBI
  • Fold representative 3hvc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hvc] [3hvc_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3HVC: [S_TKc ] by SMART
  • Other resources with information on 3HVC
  • Community annotation for 3HVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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