3HZT Transferase date Jun 24, 2009
title Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860
authors A.K.Wernimont, J.D.Artz, P.Finnerty, G.Wasney, A.Allali-Hassani, A.Bochkarev, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, M.Amani, Structural Genomics Consortium (Sgc)
compound source
Molecule: Calcium-Dependent Protein Kinase 3
Chain: A
Fragment: Unp Residues 72-537
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 508771
Strain: Me49
Gene: Tgme49_105860
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15_mhl
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.051 43.761 84.821 90.00 96.95 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, J60, MG enzyme Transferase E.C.2.7.11.17 BRENDA
Gene TGME49
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium., Wernimont AK, Artz JD, Finerty P Jr, Lin YH, Amani M, Allali-Hassani A, Senisterra G, Vedadi M, Tempel W, Mackenzie F, Chau I, Lourido S, Sibley LD, Hui R, Nat Struct Mol Biol. 2010 May;17(5):596-601. Epub 2010 May 2. PMID:20436473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (3hzt.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3HZT
  • CSU: Contacts of Structural Units for 3HZT
  • Likely Quarternary Molecular Structure file(s) for 3HZT
  • Structure Factors (509 Kb)
  • Retrieve 3HZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HZT from S2C, [Save to disk]
  • Re-refined 3hzt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HZT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hzt_A] [3hzt]
  • SWISS-PROT database: [B6KR85]
  • Domain organization of [B6KR85_TOXGO] by SWISSPFAM
  • Domains found in 3HZT: [EFh] [S_TKc ] by SMART
  • Other resources with information on 3HZT
  • Community annotation for 3HZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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