3I4B Transferase date Jul 01, 2009
title Crystal Structure Of Gsk3b In Complex With A Pyrimidylpyrrol Inhibitor
authors E.Ter Haar
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Synonym: Gsk-3 Beta
Ec: 2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsk3b
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: High-5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.750 86.100 178.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand Z48 BindingDB enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • excitatory postsynaptic pote...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceStructure-guided design of potent and selective pyrimidylpyrrole inhibitors of extracellular signal-regulated kinase (ERK) using conformational control., Aronov AM, Tang Q, Martinez-Botella G, Bemis GW, Cao J, Chen G, Ewing NP, Ford PJ, Germann UA, Green J, Hale MR, Jacobs M, Janetka JW, Maltais F, Markland W, Namchuk MN, Nanthakumar S, Poondru S, Straub J, ter Haar E, Xie X, J Med Chem. 2009 Oct 22;52(20):6362-8. PMID:19827834
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (3i4b.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3I4B
  • CSU: Contacts of Structural Units for 3I4B
  • Structure Factors (1020 Kb)
  • Retrieve 3I4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I4B from S2C, [Save to disk]
  • Re-refined 3i4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I4B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I4B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i4b_A] [3i4b_B] [3i4b]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 3I4B: [S_TKc ] by SMART
  • Other resources with information on 3I4B
  • Community annotation for 3I4B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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