3I60 Transferase date Jul 06, 2009
title Crystal Structure Of Erk2 Bound To (S)-4-(2-(2-Chlorophenyla Methylpyrimidin-4-Yl)-N-(2-Hydroxy-1-Phenylethyl)-1h-Pyrrol Carboxamide
authors M.D.Jacobs, X.Xie
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Extracellular Signal-Regulated Kinase 2, Erk-2, Mi Activated Protein Kinase 2, Map Kinase 2, Mapk 2, P42-Mapk,
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erk2, Mapk1, Prkm1, Prkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7blue
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.061 70.251 119.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand E86, SO4 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceStructure-guided design of potent and selective pyrimidylpyrrole inhibitors of extracellular signal-regulated kinase (ERK) using conformational control., Aronov AM, Tang Q, Martinez-Botella G, Bemis GW, Cao J, Chen G, Ewing NP, Ford PJ, Germann UA, Green J, Hale MR, Jacobs M, Janetka JW, Maltais F, Markland W, Namchuk MN, Nanthakumar S, Poondru S, Straub J, ter Haar E, Xie X, J Med Chem. 2009 Oct 22;52(20):6362-8. PMID:19827834
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3i60.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3I60
  • CSU: Contacts of Structural Units for 3I60
  • Structure Factors (83 Kb)
  • Retrieve 3I60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I60 from S2C, [Save to disk]
  • Re-refined 3i60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I60
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I60, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i60_A] [3i60]
  • SWISS-PROT database: [P28482]
  • Domain organization of [MK01_HUMAN] by SWISSPFAM
  • Domain found in 3I60: [S_TKc ] by SMART
  • Other resources with information on 3I60
  • Community annotation for 3I60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science