3I85 Cell Adhesion date Jul 09, 2009
title The Crystal Structure Of Human Emmprin N-Terminal Domain 1
authors J.Luo, G.L.Gilliland
compound source
Molecule: Cervical Emmprin
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hemmprin, Bsg, Hcg_20562
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_organ: Kidney
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcep4
symmetry Space Group: P 32 2 1
R_factor 0.227 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.480 83.480 49.720 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
Gene HCG
Primary referenceStructure of the EMMPRIN N-terminal domain 1: Dimerization via beta-strand swapping., Luo J, Teplyakov A, Obmolova G, Malia T, Wu SJ, Beil E, Baker A, Swencki-Underwood B, Zhao Y, Sprenkle J, Dixon K, Sweet R, Gilliland GL, Proteins. 2009 Aug 12. PMID:19768682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3i85.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3i85.pdb2.gz) 28 Kb
  • CSU: Contacts of Structural Units for 3I85
  • Structure Factors (57 Kb)
  • Retrieve 3I85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I85 from S2C, [Save to disk]
  • Re-refined 3i85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3I85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3I85
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I85, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i85_A] [3i85] [3i85_B]
  • SWISS-PROT database: [P35613]
  • Belongs to the basigin (basigin) family according to TCDB.
  • Domain organization of [BASI_HUMAN] by SWISSPFAM
    • Other resources with information on 3I85
  • Community annotation for 3I85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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