3IAP Hydrolase date Jul 14, 2009
title E. Coli (Lacz) Beta-Galactosidase (E416q)
authors S.Lo, M.L.Dugdale, N.Jeerh, T.Ku, N.J.Roth, R.E.Huber
compound source
Molecule: Beta-Galactosidase
Chain: A, B, C, D
Fragment: Beta-Galactosidase
Ec: 3.2.1.23
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Lacz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lmg194
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbadhislacz
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.230 162.340 202.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BTB, DMS, MG, NA enzyme Hydrolase E.C.3.2.1.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStudies of Glu-416 Variants of beta-Galactosidase (E. coli) Show that the Active Site Mg(2+) is Not Important for Structure and Indicate that the Main Role of Mg (2+) is to Mediate Optimization of Active Site Chemistry., Lo S, Dugdale ML, Jeerh N, Ku T, Roth NJ, Huber RE, Protein J. 2009 Nov 21. PMID:19936901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (742 Kb) [Save to disk]
  • Biological Unit Coordinates (3iap.pdb1.gz) 730 Kb
  • LPC: Ligand-Protein Contacts for 3IAP
  • CSU: Contacts of Structural Units for 3IAP
  • Structure Factors (2424 Kb)
  • Retrieve 3IAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IAP from S2C, [Save to disk]
  • Re-refined 3iap structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IAP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IAP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iap_A] [3iap] [3iap_D] [3iap_B] [3iap_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3IAP: [Bgal_small_N ] by SMART
  • Other resources with information on 3IAP
  • Community annotation for 3IAP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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